Web document 5.1. Organism-Specific BLAST and FASTA Sites
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These sites provide access to databases with sequences that are not available in standard NCBI BLAST searches. Some use the WU BLAST 2.0 algorithm (described below) |
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Organism |
Description |
URL |
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Bacteria |
Cyanobase (Cyanobacteria) |
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Dictyostelium discoideum |
Dicty blast |
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D. discoideum Genome Project |
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Fungi |
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Schizosaccharomyces pombe |
The Wellcome Trust Sanger Institute |
►
http://www.sanger.ac.uk/Projects/S_pombe/blast_server.shtml |
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Aspergillus fumigatus |
The Wellcome Trust Sanger Institute |
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Candida albicans |
The Wellcome Trust Sanger Institute |
► http://www.sanger.ac.uk/Projects/C_albicans/blast_server.shtml |
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Neurospora crassa |
Whitehead Institute |
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Pneumocystis carinii |
The Wellcome Trust Sanger Institute |
► http://www.sanger.ac.uk/Projects/P_carinii/blast_server.shtml |
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Saccharomyces cerevisiae |
MIPS |
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White rot |
Department of Energy Joint Genome Institute |
► http://www.jgi.doe.gov/programs/whiterot/whiterot_mainpage.html |
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Insect |
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Drosophila melanogaster |
FlyBLAST |
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Mosquito |
An NCBI BLAST of culicidae from the Mosquito Genomics WWW server (► http://klab.agsci.colostate.edu/) |
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Anopheles gambiae |
AnoDB |
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Microbial Genomes Various |
Allows BLAST of both completed and unfinished genomes |
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Allows BLAST of both completed and unfinished genomes |
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Comprehensive microbial resource at the J. Craig Venter Institute (JCVI) (formerly TIGR) |
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Dozens of organism-specific BLAST searches |
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Parasites |
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Various |
At EBI |
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From the Oswaldo
Cruz Institute, |
► http://www.dbbm.fiocruz.br/genome/parasite-genome/parasite_blast_server.html |
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Phytophthora |
A plant pathogen studied at ► http://www.ncgr.org |
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Plants: Arabidopsis thaliana |
Thale cress |
► http://genome-www2.stanford.edu/cgi-bin/AtDB/nph-blast2atdb |
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Protozoa |
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Babesia bovis |
The Wellcome Trust Sanger Institute |
► http://www.sanger.ac.uk/Projects/B_bovis/blast_server.shtml |
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Giardia lamblia |
Marine Biological Laboratory, Woods Hole |
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Plasmodium chabaudi |
The Wellcome Trust Sanger Institute |
► http://www.sanger.ac.uk/Projects/P_chabaudi/blast_server.shtml |
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Plasmodium falciparum |
This is the organism that causes malaria |
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Plasmodium genome resource |
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The Wellcome Trust Sanger Institute |
► http://www.sanger.ac.uk/Projects/P_falciparum/blast_server.shtml |
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Tetrapygus |
Sea urchin BLAST |
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Various organisms |
TIGR BLAST |
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OnmiBLAST server at The Wellcome Trust Sanger Institute |
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The Gene2EST BLAST server |
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The oral BLAST server |
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Vertebrate |
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Ciona intestinalis |
Sea squirt |
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Danio rerio |
Zebrafish at The Wellcome Trust Sanger Institute |
► http://www.sanger.ac.uk/Projects/D_rerio/blast_server.shtml |
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Fugu |
Includes Fugu (the pufferfish) and zebrafish |
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Department of Energy Joint Genome Institute |
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Gallus gallus |
From ChickMap ► (http://www.ri.bbsrc.ac.uk/chickmap/ChickMapHomePage.html) |
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Homo sapiens |
Allows searches against specific chromosomes |
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Premiere human genome site |
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Mus musculus |
Chromosome-specific mouse BLAST |
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Mouse Genome Informatics at |
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The Wellcome Trust Sanger Institute and Ensembl |
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The Wellcome Trust Sanger Institute |
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National |
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Xenopus |
Contains data from both X. laevis and X. tropicalis |
► http://www.sanger.ac.uk/Projects/X_tropicalis/blast_server.shtml |
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Brugia malayi |
The Wellcome Trust Sanger Institute |
► http://www.sanger.ac.uk/Projects/B_malayi/blast_server.shtml |
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B. Malayi BLAST server |
► http://www.dbbm.fiocruz.br/genome/parasite-genome/Brugia_blast_server.html |
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Caenorhabditis elegans |
WormBLAST;
also other organisms; |
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C. elegans |
The Wellcome Trust Sanger Institute |
► http://www.sanger.ac.uk/Projects/C_elegans/blast_server.shtml |
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C. elegans |
Steve Jones’ Genome Project DNA/protein databases |
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