Chapter: 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | App 1 | App 2
| Website | URL |
|---|---|
| The European Small Subunit Ribosomal RNA Database | http://oberon.fvms.ugent.be:8080/rRNA/index.html |
| The European Small Subunit Ribosomal RNA Database (alternate) | http://oberon.rug.ac.be:8080/rRNA/ |
| The Convention on Biological Diversity | http://www.biodiv.org/ |
| The Global Biodiversity Information Facility | http://www.gbif.net/ |
| The Tree of Life | http://www.panspermia.org/tree.htm |
| The Tree of Life Web Project | http://tolweb.org/tree/phylogeny.html |
| The Wellcome Trust Sanger Institute | http://www.wellcome.ac.uk/ |
| Genome Sequencing Centers | http://www.ncbi.nlm.nih.gov/PMGifs/Genomes/links.html |
| The UK Human Genome Mapping Project Resource Centre | http://www.hgmp.mrc.ac.uk/GenomeWeb/genome-centres.html |
| The UK Human Genome Mapping Project Resource Centre (alternate) | http://igweb.integratedgenomics.com/GOLD/Genomiclinks.html |
| TIGR | http://www.tigr.org/ |
| Celera Genomics | http://www.celera.com/ |
| Phred and Phrap | http://www.phrap.org/ |
| Examples of Phase 1,2,3 sequences in GenBank | http://www.ncbi.nlm.nih.gov/HTGS/examples.html |
| Trace Archive BLAST server | http://www.ncbi.nlm.nih.gov/blast/mmtrace.html |
| Resource | Description |
|---|---|
| EBI | European Bioinformatics Institute |
| GNN | Genome News Network; includes photographs of organisms |
| GOLD | Genomes Online Database |
| Infobiogen | Complete microbial genomes |
| NCBI | Entrez at National Center for Biotechnology Information |
| PEDANT | Protein Extraction, Description and Analysis Tool |
| TIGR | The Institute for Genomic Research |
| Resource | Source and description |
|---|---|
| BCM Gene Finder | Provides several tools to identify genes |
| GeneFind | Protein family identification of queries and keyword searches |
| GeneMark | Provides several gene prediction programs |
| Gene Parser | Identifies protein coding regions in genomic DNA |
| GeneScan | Identification of complete gene structures in genomic DNA |
| Glimmer | A system for finding genes in microbial DNA |
| GRAIL | Gene Recognition and Assembly Internet Link |
| ORF Finder | Open reading frame finder |
| Procrustes | Gene recognition via spliced alignment |
| Description |
| NCBI’s Entrez genome |
| The Institute for Genomic Research (TIGR) |
| InfoBiogen (click “genomic”) |
| GenomeWeb of UK Human Genome Mapping Project Resource Centre |
| ORPHEUS-Gene prediction software |
| Transcription factor database |
| FastM and ModelInspector-Search for two distance-correlated transcription factor binding sites |
| The Sanger Center-Danio rerio |
| The Sanger Center-protozoans |
| Artemis: a DNA sequence viewer and annotation tool |
| WebAce-The Sanger Center |
| Genome Databases in Japan |
| E-Cell Project |
| WIT home page |
| Sea urchin genome project home |
| Sea urchin genome project |
| DNA Symmetry Elements and their Meanings-On the chronology of genome sequencing projects |
| Database of Genome Sizes (DOGS) |
| MAGPIE |
| The Tree of Life Web Project |